NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10009550

Scaffold Ga0315909_10009550


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10009550 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10483
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F003659Metagenome / Metatranscriptome474Y
F006697Metagenome / Metatranscriptome366Y
F010159Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000955011F003659N/AMTAADVLGRFLIAKEDVPVYDLPNGTRIGEIKKGNSTSEVYSYVVRNGQVWWMFDYTIPGQQPGAYYVMQKTGRFTLSSVPGRVAVQTAQLSPVDVFPKMGGNMLLYGALGVAAILLLTR
Ga0315909_1000955018F010159N/AMSWSIPTLIEQDIKNGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGFRAFSAVDVPTGSALLNTTILRWFETQQIAFYTGTDFYPFIHHVNVNTMLAPKNVNASAPDNENVTAYQLIEEIENTPIARQLYITSTNDVTITHGLILNSNTISANPIPVTNRTPLGLTYGGSAQLVNTQTNYGPGATPQQFMQPSPKDYQDFAFGLLPANADGQAFATPDDTFTNGLVDATAFYGSFFGADFRNSAAAQYYLCLHYALYTETVPEYRG
Ga0315909_1000955019F000710N/AMNISYRQGIRNKGFQVTVPTTGASQTLSLSGLAKAFEGIRFSATTSAAPATLINATQLRITLTINNDVVCDDICAHDLGASTGAGITSGFPYFVPFPRALTGQDTILLRVTNSSGASQILNVTVFYKNEI
Ga0315909_1000955020F006697N/AMANQVQKLAYVDSKLGVSLPGQQTTRVIYDSVNATVGQSYYEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIIMGSSTATIIDHLNLNITVGNQVVLKDFDPSFNATNRGLAFDRLHSGLNDDKNLEVRLLTDIVIPPQVNFKATLQLATGLVAANDDVTIVFKGYGRIFSAGASF
Ga0315909_1000955021F002259N/AMSAQDKMITVANRLGLTSLKDMQGTTRMVYDSQGTAALTHTFFKGAAQRAFPLTNVGANGNQFQVDEALLVEKIGFFIPTAADGVAYLGLAGVSVKFDLVIGNKTVIKDATVEFGGEQAFYNDGTVGSSVIDLEGVGILIPPQVEYYVVAKPFLSGARTATSVRLGCYLFGTGALLNFNTTI
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