NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10012237

Scaffold Ga0315909_10012237


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10012237 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9003
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F006017Metagenome / Metatranscriptome383N
F027501Metagenome / Metatranscriptome194N
F038213Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100122372F027501AGGAGMYSDIKAGIRWVIDNTGVDEAVVEFVRTFITVSISVALGLGIPLLDISGGDFRTIISAGLASGLQILIKFLDPKNTQFGIKEKTPEEKALAEKQYDI
Ga0315909_100122373F006017GAGGVKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASKYVVDPSAGDGIKAKAKATGFVEKEGVSDNGSSLGDLIKTAKEMGAKARYAKSWDDVVLSAHRGAGLIVWVQQAVDYPAVEISEWHKRWEAYWSKKDRKHIAIGYGHVTAAGWDAVDGWQWACPTRSGKGKEKFGVVVTEEQLKQIAASKKKQTGGAAFKHVVIVECK
Ga0315909_100122374F004668AGGTGGMTTEQHVKELKEQGWTRVDTVPGEWVALVLNDDHTAYGGTLWRRGSDGFDYSEGCTAGHPVSAEYPHEMAGLRIAALIQEENAA
Ga0315909_100122376F038213GGAGGMTRSQVDAIIDRLDAQSAKIDALKQEIDQMKGGLAVLKGLGALLGVGGIGTLLAWLQSQSGK
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