NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10012766

Scaffold Ga0315909_10012766


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10012766 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8776
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031377Metagenome182Y
F039000Metagenome164Y
F045551Metagenome152N
F097185Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1001276612F097185GGAMTRKQRAYLHIIILPFVISAAVEFLPAWLYWPIALIGGMAWLGAWVILMEKENK
Ga0315909_100127666F039000AGGAMTKRTDTTDKDIEQIMDDAQVLLNFCSNTFVKPADAWFACLVSSAILTAELSVPLEKFLEGFEHAYGDAMKAKNAMKGPSYDH
Ga0315909_100127667F031377GGAMITNANDFISVDRINQRLTPFNTGKVQIGLLYQPPPPEMTDSEELIQSVLLGTGSIHNEPPLWPVILGSAVLACLLIYFVG
Ga0315909_100127669F045551GGAGGMTEQRELEILRPYVAACGEMVTKNAALEKQLKAIDRLLLEVLMGDTDPMQAMINRQKIKDQFDDQH
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