NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10013506

Scaffold Ga0315909_10013506


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10013506 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8493
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (74.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F010247Metagenome / Metatranscriptome306Y
F022646Metagenome213N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1001350610F006893AGGAMANLTIGNISEITKKVLCNPKLYKELDFFQVPHNKVCLAVIRELTKLSYNEIGKAYKKSWFTIYSAVKDTNKNGLKSFTAKVIDLVKAEVK
Ga0315909_1001350611F022646N/AVQIRKANIIYSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKVGNVGKGIRDDRFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKLASISPCNKINQSKQEGSYNGKLDYRQHIRNNKKGSLQS
Ga0315909_1001350627F010247AGGAGMNVQGVIKYVYDNRLGKDGMANKFPNFKFKVGEQEIVLWSSILHPAIVKGKNVSVTVQASKKNGSLFVLTKEDKSPMIQELPSGAKPDTSFNVDDFESENFNEAVTAIEKDMASSSVPSKAFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQ
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