NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10013701

Scaffold Ga0315909_10013701


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10013701 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8426
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F028150Metagenome / Metatranscriptome192Y
F037227Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1001370110F000473N/AMDSSHFKHGINLWTGEPNKPVFYNSEMAKAVRSITKPSNKLMMDIVKYPEFLALRLYEDNFIQFEGLKKEMVIDYVGKVKKLIESYGVRCELEGVPSEKVL
Ga0315909_1001370112F000671GAGGMEKLLCYSCNKSKNKLNMKRSTLFPINLLMCETCITSKYEPRWVIILSGRQNGSESVREFILKKRYEGAEISASELLV
Ga0315909_1001370113F002060AGGMTLDLNSIIIAISAAILSGMGTAIIAGLNENKREKNRQREREQDHLKIELKDLKIELYKLEKELTDWKDKYYSAIQELISVKSELESALSELSHIEFKHDFDTEF
Ga0315909_1001370118F037227N/AMANMTVLEGIIEDVAVELYQKLWNAIPADEQTEEASKAIGLNARETTLYVIQNFMNKFNAAAEALKDS
Ga0315909_100137012F028150AGGGGGMNWLKKRVIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKE
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Institute for Fundamental Biomedical Research
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