NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315909_10014988

Scaffold Ga0315909_10014988


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10014988 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7979
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F027490Metagenome / Metatranscriptome194Y
F098944Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100149881F001915AGGAMEWTLAHPLHDVDDIVNMADSVFGHEADGILTRDKAVFRKNVTIATTVQVFDKSKEFIAVCRGDKLVKTFIGDAAEDTLLAYCWFDRGGYTTYANEEISNAKFHHVDLSLSPRLRVRLINEMIDQHILWANRWGIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGIECLTK
Ga0315909_1001498810F003521AGGAMKSLVSNIRDYFNRRTKVIDSHKEAHVTRKTLVIENGECAKRLLKNDDFALLFNLYRFYLLEMLEDSKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK
Ga0315909_100149882F098944AGGMFDEIRPEGSTVTSEEIKKKAREYAKARRAQSKAMKLATGQIEPKAIETVPVVDEFDMTAFVPRSQAKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALKDFMESLRKV
Ga0315909_100149885F027490GAGMSYGTVINGGAQMRKGLTKGINDKLVDHAAENGRRDQVAKAVNNAYTVNTVSSQHTNNVKNSGKFTKPSNTSKNYAL
Ga0315909_100149889F004695AGGAMLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEIDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDESMQEPTGDELQDALRNNTIYRAKYKLTGYETSIRVKHVGQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWLRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPSKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAGTCLKGAPFMDAISIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFGQAMMQIPPEVPEMFIKIRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETQSKVALNNAKAEESGSVTALNIRKAQDIDTDDMFEALAAKRGELSSVQV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.