NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10019722

Scaffold Ga0315909_10019722


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10019722 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6815
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004667Metagenome428Y
F009514Metagenome316N
F048999Metagenome147N
F093496Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100197223F004667AGGMARPPKVDTVQFRRKLDNPKLQILLSAGQGNISQGFENLLSLYQHLHGIGYRTDSPLETIGLVTNLDQSKRDSPNHVN
Ga0315909_100197225F009514AGGMTKQQILALQSIGKGIIESANLSSTGAPGGVIYSALMGQGATFNQFEQIMSTLVRHGFLSHDVDASTYHATEAGLQWAKKV
Ga0315909_100197226F048999AGGMLTITLHQKTDNDGWQSIKSLPIDSAQWGEIDRSWIDTLMQTGSMVITIGHTMYSIDKN
Ga0315909_100197227F093496AGGMTFYQAAIDNFPEDQATIDADFALSLFETEGADYYHQWLMKERSSVIHNTFDDNQAQIKRYIDRFNDLTAQKTNFFM
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