NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315909_10021235

Scaffold Ga0315909_10021235


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10021235 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6525
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Cnuella → Cnuella takakiae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046201Metagenome151Y
F082383Metagenome113N
F093342Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100212353F082383N/AMNDPKVVRGQNMIASIKVSGTFYPVFCAKSCSFEMTNEIINKTSVNDGLFTKRRVRRTEWSGSASGVLVTNNDGDRFSPFYLLQDSVRRSSRTWQFEFTNLDGDIKTIEGDALIQNLPISGDVQSFVQCTVNIIGTGAFAIDVSSSSIVSDENVDSDYWNTTAGANSISGLSVDGKSLQGKTILAISREGTVYDPITSGSPTNRIALFNSATGTITFDSNIPFNPSETVWAMWKD
Ga0315909_100212356F046201GGALRSEAFGQIGLLPHQFYDLSFDEYLLLRKGYVEKVKNESILVRFQTALICEALIGKGNGARFVMDSWQLEEQGELSKDDIKSLLKAKREKEALKRIKQNG
Ga0315909_100212357F093342N/AMKTITHSIGGKDRILDVGKMWFSKFYGEATSSDPLLMSELLSKPNKQFDFICGLVYGGINCHNKVTNNSEFVTIEQVQDWVGSMDENEAADLINKFVEVNKPKEQGEK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.