NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10024021

Scaffold Ga0315909_10024021


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10024021 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6052
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F024063Metagenome207N
F050976Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1002402112F000141GAGMTNVWPVMMTGYYTMVSIWFVPSATVGNKDITTMYPQFKCNGCKRDTEFLWLEQLETPEGFKAYQCMECGCTGVKNVVEALHIPDSDICRCDKCGSWKFETVVCHTCQLIGAK
Ga0315909_1002402114F050976GGCGGVIVEDQMFNYIKKRYLPDLERSQEFDTWDCISQQSRMYIELKARRNHYTELLIEKSKYESLTITAMRKNYTAWYINATPLGLWAFNLTKLSKPVWKDRPMPTSTEFADKSQRIKQVGYLKLVDGIQM
Ga0315909_100240219F024063N/AMTMEIAVYLFIGLSMAYWLVLMRIDDMKQAHYWRGRKDGWDMHRRMIQNKVKTDEVFDYDKN
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