NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10024102

Scaffold Ga0315909_10024102


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10024102 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6040
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F005348Metagenome / Metatranscriptome403Y
F047494Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1002410211F005348AGGMINSVMSFDCDECSGSGLIFWGDNLDYDVKPCDCENFAIGTLFTSREAD
Ga0315909_1002410214F000808GGAGMDKEYTYALTTSYDGELIHTLRVSDMLTAVDAWNKCVDYGTAKEYATYNLSDPTGKMYTKTFYTNGEVSIK
Ga0315909_1002410216F003393GAGGMITLEKDDIIEIMDYKKVDVLTAGQLMVDDAILIADEVVSISDIQSLADGYVLEVVNDFGERDTIEVGEYDQFDLMMLQ
Ga0315909_100241029F047494AGGTGGMTTLVKECVKHTPNKNAISIHEDMKYTFCENCESNIYSHYIEDSEIMSYWSSWKVGK
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