NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10027280

Scaffold Ga0315909_10027280


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10027280 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5610
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F020665Metagenome / Metatranscriptome222Y
F021063Metagenome / Metatranscriptome220N
F022371Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1002728010F022371AGGAMFCLLDIAGIVWVISWFLLYSTLTLSAIYCAGYLVFKLIEIIRKELDK
Ga0315909_1002728011F021063AGGVRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKSGVIAWWCRASGVQIDNRTLLRKIKENDYVLPT
Ga0315909_1002728012F003304AGGMKQALVTQSFGDEWKKIIDLTRPRMEAYCKRHSIDFILIDKPLTHPAQYSKSAIGNIIATKGYEQVAFVDADVLIANDCPNLGEDAGVFCAFDEGAFLDRKPDMVKLAAAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWFNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDMIQLATSIQYDDAKLAGLGR
Ga0315909_1002728014F002009AGGAMTAPTIQEMGSAAQEIVWRVMGKGSDKSAYGDWLLKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIRKEVPRL
Ga0315909_100272804F002826N/AMQVEAKDRLKWAREILSIARNKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVVEGE
Ga0315909_100272809F020665AGGAMRKRKAGKNIKLIKTEQCDSVRIMIDIDNDLYEAMADAGKHHLAKDKMACFTYALNKALFELCEEIK
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