NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10028692

Scaffold Ga0315909_10028692


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10028692 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5437
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002099Metagenome / Metatranscriptome593Y
F046906Metagenome150Y
F066529Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100286923F046906GGAMYDQETNSQSKETRDRSERKTNAMGDTHGKRNPMHLCFGYGGQLYAWPLGQRSGQRRDIQDDFTRFFYSYRRHDWVPEWYQTHAK
Ga0315909_100286924F066529GGAMIDKIRWFPIVDATGYPQKTDGTQRRIEKHQEEYRAIVKSAKAEKKLDDLLFELYCKKAEQQEIRLEIFTNRKLDVYV
Ga0315909_100286925F002099N/AVKWLLALVLTLALHSTSKDLCSVREFYGIAYTIHNPSERHQQMSAWLTNHQNLCKSTDFVVIWNNLSEWAGTADSALLRHKVIQGYKNALEREKK
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