NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10035810

Scaffold Ga0315909_10035810


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10035810 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4750
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012105Metagenome283N
F041721Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100358104F041721GGAGGMSDSQLESLRAFAARERGHLLEHCPPIPVVSDWFLEVDRNGRITGQVISGACTSHVQYDPRFRAVFRHDCTFYSSGLGEWLHMVETFWRQTLRQWQAYRHLGELLQAAEDCTPETHEQAWRAVYECLGWNPDTARERYLERRAGK
Ga0315909_100358105F012105GGAGGMIPLAIRRHHLQDLTLGQSVVLTVPHCEERQIRRAVGTVNAERTDGLRLKTLRTPDGLLVWLVESVDIADCPEWQTGKSRRFPGRDPVAVGKAVVKLNEWARVMRRPYRFRVVVRDLVPIVLKLPKNKTIRIRREAELSRVMKAVERLRAGQGTVVRGVERCDIVRAKWRMKKRGIRFIVRNIGESVWNVERVTE
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