NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10038255

Scaffold Ga0315909_10038255


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10038255 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4568
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015061Metagenome / Metatranscriptome257Y
F061533Metagenome131N
F075040Metagenome119Y
F089880Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100382552F075040N/AMKDTPKVKSESVEKPLIQNSDLQREIYLRLVSSAAADGRFLLGNLPNANAVVKQGDHLRGVAELLASCYEK
Ga0315909_100382555F061533N/AMSNQLDGIEQKDIIKRVTGKVTKLWEPKTFTGPKGEFVIQGGDIEIDGNTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKIEFDQPSEEPARVAHTPKSIVTDNPEKAIDEIVEMHRYINSLVRHTYKDVDDEETLRSYVSSVFIEANRKGIRYSRHKVEEPKVEEQKVVEPDPLDWASAIVPSGSQKGKKLAAIGKPALTKLYEYYLEKGFTTPFAKCVEKAAEDLNLDAPVEDDIPY
Ga0315909_100382556F089880N/AMKKKELELFSPTQEGVLVPLSTYLRHMGEFVKDEWPGINITEAHIKKAWSKLQKNEYLDDDAPDEMLEMYERMSADWDMAKEMEEDRQNVDDYKPEPIAATPEPVNESLALVESVKNGLELSSFTQKFDIGAGMTQCVPKGKVEMKDWVAAFAFGLTLESGAQWIIGDSVCALENGGHEDVVNQLCSNFKKSYSTVSGYARACRAFPVGKRDPMLPFTVYREIGNANFGDDKTNKKKQDELLEAAKNDKLSSTEVRNLVRHEQGRDDKPMGHRYLLLNVTNFGNSEIVRNMPEEVQEHQLLIDLGDKSWFDPAEGDWIKFLKEQ
Ga0315909_100382558F015061N/AMSEPTQQNETSKAVMEAFTFIRCQDETLNERVHAMASLLHTAAMMVIKSESRKGEGFECIKYLELAFMYYQNAQFRKRFDTEEKEETSRIIS
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