NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10040281

Scaffold Ga0315909_10040281


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10040281 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4426
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003863Metagenome464Y
F004110Metagenome452Y
F013279Metagenome / Metatranscriptome272Y
F018135Metagenome236Y
F027417Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1004028111F027417GGAGMSYDYRVTFVTDYLTITTNVCLELDDTTGNLSAEAYEQATINGMNNIEDEIGKIDETIINDITVTLILDDGEVELNEL
Ga0315909_1004028114F018135AGGMTVERIKHSGALVVSQFIGEGAGEYLFTRTYYGYTLKQAKAQFKLAIEREGE
Ga0315909_100402812F004110N/AMAYGLKYRTMTELHPVTYDLALSVAISISNRYKNHVERDDVKQECLAWAITRATWISEQMLEPNDDKRRHNEQRIAYQMRRVAERYARKEKALKSGYQTTDEAYYESAKLGQLLPFVIASVVDGTVLEQIQQMIQDGQPKGKSSPSEGGNLLATLIDIKRCFLKLDVQDQTLLRLRHFDNYTLQQIAGQLECAVSTADRRCNNSLRKLINLLGGQSPWQ
Ga0315909_100402814F013279AGAAGMKYDYKCPQCDSKLTIERSIHEDAKDPGCFVCHITMARVYDAPGIQFKGRGFYSTGG
Ga0315909_100402816F003863GGAGGMESKEVSGKQSIHYRNYRRARDKALVRLAHLYPETYKQLLDEQRSFDEQEGKTWIIASDSRLTVGIHTRANAVPEVAGRTDYDSSDEGNNGGEG
Ga0315909_100402817F001477AGGAGGMSNVYTIHPQKSDLILFYEVVEAEGENTWGGADASQAIEWLVHSPVGSRILVSAWDSDEEDAHMVGQTLDITEIVKAASL
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