NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10052297

Scaffold Ga0315909_10052297


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10052297 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3771
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020322Metagenome224N
F043821Metagenome155N
F069708Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100522973F043821GGAMAIMTEDDYYEIKVYPKGNRIVLRFVGDCWDKYNWEMTYNTYVAPLVRRYSPDWITWGDRIELTHGYYVWTWEPAVLDIKGDG
Ga0315909_100522974F020322GGAGGLSDDQIWDAFISAIPAQDRARHDLENFQARLLKNALQEIEDLKLEITQHQAEIVQLQEVLQGYSSLLHDTKEDRNRFRDDWQAMVQDLSRWKKN
Ga0315909_100522978F069708N/AMKYTGTTDGASAGKRAGTEKFVDIMTNKGFTNLGTWAVRNMRGSDRLSVHATGRAADIGYKDKGTAALWANWLVANYKVLGIEEVHDYAGTTKKGCEKWGRGWRCNRDGKPGWKDWTETANGGSGGGLWLHVELTPAMADNPNAFVEAWKSVPRPA
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