NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10061549

Scaffold Ga0315909_10061549


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10061549 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3408
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F019614Metagenome / Metatranscriptome228N
F082581Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100615491F019614N/AMNTASIASNKIKVEYSAMPGDNREFLTFSVPNGWDDVKKLTNRVLTYNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0315909_100615492F006181N/AMTTDMSTADILERVFAEWNHGSGRECEMFINSKKRSLSVNDIVCVNGTYFQCASFGWNEVTPAYVNELEEAVAAHPSRVEGAWFALMDVMWERHNIVVA
Ga0315909_100615493F082581N/AMNSTSTKTVKVGRPSTNLKLILNKSFTLKDLQNLNPDVKFVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPANIFINSKVYKANLANLSKSKATINVNEPVTVDQPVTA
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