NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10070075

Scaffold Ga0315909_10070075


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10070075 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3139
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005146Metagenome / Metatranscriptome410Y
F020863Metagenome221Y
F051794Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100700751F051794GAGGMKATDKRKANAEKRAVWLRNYQRARGRAQTRLAQQYPDQYKAILEQERLSDEANGKAWLDITGTTDNSDGVSTDTDGYDNAPRPKQTD
Ga0315909_100700752F005146AGGAGGMKLINFYEVADRRSDSTWGGASASQAIEWFRRGLDNKLFVSVWNEEDIEEPKLVIDKIDITALVLATIVNEKEKG
Ga0315909_100700757F020863AGGCGGMQTTMEDLRRLVGVLEELVRPLLEGEEVEDTYESNKRPHLVLQEGSKTYGRAFRVHFSGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGQMISEKEEASK
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