NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10079179

Scaffold Ga0315909_10079179


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10079179 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2906
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005727Metagenome / Metatranscriptome392Y
F037598Metagenome / Metatranscriptome167Y
F064683Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1007917910F037598N/AMTRTNVLPLDLCTVTLTEAQWSTIRTAVLCLAVDCRTAGKGTDADYYLNAYNTLKQAMGMED
Ga0315909_100791794F005727N/AMINALTRSRSPEFHRATMLRLTIAALLLWGFWGPLYPVRSVTADVLSTTADLLRR
Ga0315909_100791796F064683N/AMTADLAASLLNRAANGAELLSILDTIANDIADANIADCAAHYARISAQPTLSEIQF

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