NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10083794

Scaffold Ga0315909_10083794


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10083794 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2804
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F014840Metagenome259Y
F046899Metagenome150Y
F066489Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1008379412F046899AGGAGVRDANLNNFDPTARQAIKEFEDWQRKIFKKNYRKGYRFFQPDSIDTPTPRSAREAWGGAYEQDNTEKNKVIAQKIIVAIVAVVLLI
Ga0315909_100837947F066489N/AMLIAVFNLGCMTVATSVATQAGVQVVGEQYLIAQNKPAIRCNLYNVMMGNKMCRVYRQYRRV
Ga0315909_100837948F006587AGGAGMDKKYEGTGFVIVGFIIGCCLMWAVMQTMHVQKKYKMNLKCIQGELYEEIKPNFYVKSHLECFEQRTLTP
Ga0315909_100837949F014840AGGAMIPFTYATVDDEGEVIRKHRWSVKEAKWFTDNNPHVKVVKLDKPVEVKEDLFALVGECLF
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