NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10119055

Scaffold Ga0315909_10119055


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10119055 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2237
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101190553F000311GGAMYIELTAPDRLSMEMAYWDAQIIGLDPTAMSPLTFSIGTGNIEKVSRIRDKHNLVESYVADYEPTGYRW
Ga0315909_101190554F001043AGGTGGMSNYQDGFQDGYKFAREEMMEKLREIDINDIDNWLLDRLADMIENNKL
Ga0315909_101190556F000450AGGCGGMGDRANFVFVDGAGDTICLYGHWAGHNMLGRLADAVIAARPRWHDESYATRIAISQLVGDQWNMETGWGLQVNSIGDNEHKIAVINWQEQTFSLHESDDHRNRENKVLGMKNEAIFTMDLTAFCEKYALEKMLT
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