NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10130755

Scaffold Ga0315909_10130755


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10130755 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2102
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025224Metagenome / Metatranscriptome202Y
F028490Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101307552F025224GGAGMADVAWMPGSLFDNIDKFANSLGYQNAGIAMELAMMSWKSTEDRDAFITSITGQDPQGGTEKNYIKRNY
Ga0315909_101307553F028490AGGAGGMAGNENSGGFRPNAPQNNPANVSGTGGAGQSGNYTGFAYGENQALNNQRMEGNQAVATTQAATPSAPSNPYEGISMPQLGTLFDPTTRPDEPITAGVDFGPGPGSDILSKNVINNARADENAKIAAQYLPDLAFAARSPDAPDSFKRFVNYLIENSQGVNPNG
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