NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10131466

Scaffold Ga0315909_10131466


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10131466 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2095
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023785Metagenome208Y
F033800Metagenome176N
F074870Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101314661F023785N/AMKYIITEEQYDRVVNKTILFWIKRRYDLVERALRETYDLMEFDICRIDDYEKFEKKFFSVMMDCLHPYFYDDENFSHLEYDMMYDILSDLFYVNCTEFYFAGREKC
Ga0315909_101314662F074870N/AMTDYKKREDVLKRIIETFVVPKYSDIEHIIVSSDSFRGMRRYNVIVLTKHVNDYPVQHKISDEIETLFKMAALNEKQMDGRDYIDISFA
Ga0315909_101314664F033800GGGGGLAGDIFTIMDNTYIALKKILNIMVPEKYPMVSDIKVIDDSYEFDSTKMYKIYLGVTPDELEVLRSSDVRDYVEEVSRYVLQGGEFMRIIFFNPELG
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