Scaffold Ga0315909_10141114

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315909_10141114

Scaffold Ga0315909_10141114

Overview

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10141114 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2002
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028146	Metagenome	192	N
F081255	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101411141	F028146	N/A	MSKDEIKTAVLNSAAEQLRGLLESNYDAIRKAASDSFVDDESQSEPVAKVSASIEWDALAQAPTVIVKLGWSARFKDESEAIVDPLQTKLNI
Ga0315909_101411143	F081255	GAG	MTTEQFNELMLEVRAIRSALTQGNKPSAPAVASKAATAGPKDIPLPSEVIENAGDVAVHFGKNKGTPLGSLSAKSVEWYAQEPEPRLRNDGTPFPPRPEDVLLRNAARTIVHRNRGTLPSPPVKLESAAPISEDVPF

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