NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10150357

Scaffold Ga0315909_10150357


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10150357 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1919
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009140Metagenome / Metatranscriptome322Y
F012211Metagenome / Metatranscriptome282N
F046258Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101503572F009140GGAGMRLNLTHKALLKRLSGAPRSMHDLTHNSVDANSVSFHYVKYLPELERFGYVISHDDKWHLTEYGRQEMNRVVSGAAMRIENGSVKELYDGKELRRNVFRKGCYDFLNHPSRFGDNHVYHKGAKA
Ga0315909_101503573F012211AGGAGMPTDEEQFKYECWAIVQELDPEDIADAIVDSVALVEAIKANHAEDVADIVMKRVELKVRRRAELRVFDVVKTQWVDDIEELQHYRNLRIERVQKALDERKIIEAKMDAPFKEMFDE
Ga0315909_101503574F046258GGAGMKLLTIAMRQVLSFFEIVTSQPSLPTLQRDKIPARMTLPSISITDPKFVYQSAACTDISQTFEKAKNERLQRLQHHADGNRKQDQSTEQQVSVKKLRRVHG
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