NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10170285

Scaffold Ga0315909_10170285


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10170285 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1765
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024097Metagenome / Metatranscriptome207N
F054028Metagenome140Y
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101702855F054028AGGAMKLVPTEEKITIKWFWVTTNGKKYRNTKGFVHNAWDVECSCGWKTFTGGAIKASVTRDVEAHKLFVHNYTWKVSA
Ga0315909_101702857F096878AGGVGLLINRDPLFSVHNSLNGDLAIYLEERDAALDLVEDVLAAVPMAHLESIESLLITDLKSSDAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPQTVKLELVK
Ga0315909_101702858F024097N/AMKWLRERGVSAERLSKAGSADEGDVVCVVANKTYIFELKNRKAITLPAFWDEAITEANNYASARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE
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