NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10225647

Scaffold Ga0315909_10225647


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10225647 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1460
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023332Metagenome / Metatranscriptome210Y
F078423Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_102256471F023332N/AYQWVNITPGAGQSPTTSGPNGTLNSIYWGEAQPSYGNNDGDWDSTTSYTIGQIVLYPVTQEHYQLYAIAPSGTVPTNTAYWGILNKFLRNISQTNNPDGTTRAVPIGETFSVWPADPRVTWRQQEVTYTFTDDGVLVGNDLPYVWLEFRKTPPLLSSSAEATAYAFPYRFCEICALKAAGQMLRVDGKIDLGNQFLELGEVELTKEIDKVALQEKYVRQIIVPSR
Ga0315909_102256472F078423N/AMPDLPQIGAIDDGFVGVVSRIDPALIPASYVSNAVNRRFEDQVIKNRWGIVQPKWGGRWSSGSRIVTLTSGSSVGVPVSGTQIPANSQVVCDVDANTQIFSNGTLCTLDDNTNAIFSTAAFSFAPSPANKTVQFYNSTAPFEDILGVLQYRDPDTGANALLVAVNEERSSDGGQGKVWCIRPNQSPVEVPMNGHDIYLPVRLIQATNGVVMLRPGNARYYFTEADVNTGNNTVTLNVVPDLATGDIVNVGQIGNAAPLWN
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