NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10312758

Scaffold Ga0315909_10312758


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10312758 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1167
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F012862Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_103127581F012862N/ASTSFVPASSKFRRRHVFTNKASIMEEGKSLVISPKHSERLVFEADGQTVFMPIGKSVSVKRPGGTASRNQFTLAHGRFFSGQLVNSSIKKSGFQQLFNISMAKALKLPVSIKKVQYSFSPNTIRGQADASLAAAFGGVL
Ga0315909_103127582F000258GGAGGMTANYKLDAMIELRKFLWNELKTKNIFDDEDYWSDNLDENIIPIVPVQQTAEMNQFLSGKKHLVYDKIGMSYEDNWAICCEQILFTIYSTDFSEINEIRNFMTDLFRRMDESARDVNYWSGLSDKFKFHSIFIADISPTTPSEELQGFFAADVILEIKYSRIMDQVGRFL
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