NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318527_10249418

Scaffold Ga0318527_10249418


Overview

Basic Information
Taxon OID3300031859 Open in IMG/M
Scaffold IDGa0318527_10249418 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006088Metagenome / Metatranscriptome382Y
F019895Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0318527_102494181F006088AGGAMSSERDACRRRADEAKQRAAQATEPFVKSAYEKVAEHWMLLARLESFVGDEESNEEA
Ga0318527_102494182F019895N/ARAAGVYALRSQIENYRAKAEKFARLAAVAKSPRQSRQCRKLAEMYWALAMGEESERAPPSKSNVKGSTTWPRIP

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