NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318495_10006829

Scaffold Ga0318495_10006829


Overview

Basic Information
Taxon OID3300031860 Open in IMG/M
Scaffold IDGa0318495_10006829 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4576
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068183Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0318495_100068295F068183N/AQHPGLIPFDLFTVTDDRGATYQLDHTPGGDLEWPDEITLRPAPPEDIRWLDIAPPYRQPARVDLRPSGSPGGPGGSGEAGDQAQVSETGLSPGEHLLVMLAERLLTGAPEFPRGGLLAARHAGPRRAMAAGFGDIIAALEAADVLSPLSPVPARLATLCASLDVDGHGIGVPPAHDMPEPWLSLLAHYQRRKPDPVQMRDGYAALAAPLPELDGLRLTLLGLEHTEGSSFVHALVQGQTPDPQPGPLDVDLNFPLSLWLRDSGGRWHLGCPDRWNRGGRESTVRLRLVPSLTRPADWVEVLAGGRSAEARARLPLRWRYPS
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