NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315319_10005141

Scaffold Ga0315319_10005141


Overview

Basic Information
Taxon OID3300031861 Open in IMG/M
Scaffold IDGa0315319_10005141 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5081
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F006919Metagenome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0315319_100051412F002715GGAMPEHELQSVKLEVGLLKNEVEVRGKQIETLLQKLDLTTDKLQQLTVQIIQLNTRQEDYLWHSTSMTDEFKILHTRIGDLHDKQLAAQKDIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD
Ga0315319_100051413F000245AGGAMKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVYLRKMTPPKKGMMAFNYQLEDK
Ga0315319_100051414F006919GAGMKSFVQHLKEFTIKSTSDIVFEVGSQGQASSALKIPISGPMFKRIWPDTIRAIVFHVLDAEDIYDLKKLEGKKKSISAFFSMMAKQMESGIAGGGGVVAELEADVIVSAKDDIMSQVDKAGRRWVEMSWFENAQGWGNPPGFNNVERGLDDLIRNLVLKHLEPIIGNRARTEHEFILWGNMKRELKDSKKLSLVIKDYFDGVEKVIKDNKEVMGSIFYGYAKSKRQTDNAWDEQIVNNIKIKKLHYIPKDEEIEAEEQQENIDAFVKKYSSISAKAWSYSSELEIYTRDVVARNRPLQIKGRA
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