Scaffold Ga0315280_10004095

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315280_10004095

Scaffold Ga0315280_10004095

Overview

Basic Information
Taxon OID	3300031862 Open in IMG/M
Scaffold ID	Ga0315280_10004095 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21813
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5094	Long. (^o)	-110.5094	Alt. (m)		Depth (m)	88
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038000	Metagenome	167	Y
F079538	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315280_1000409513	F079538	AGGAG	MLLLNIKDVRKCRNSLELNDFIERYIAEGNSQDESVDSTYWSLFEEWKRTLKKKPTNML
Ga0315280_1000409518	F038000	GGA	MGDHRCENCGKMFYTRYVQYIGKCLCPECRRKSGAAKKEKEYGEAKEYWEARKKEVRDC

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