NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315280_10359481

Scaffold Ga0315280_10359481


Overview

Basic Information
Taxon OID3300031862 Open in IMG/M
Scaffold IDGa0315280_10359481 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)691
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5094Long. (o)-110.5094Alt. (m)Depth (m)88
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006410Metagenome374Y
F009732Metagenome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0315280_103594811F009732N/ALKKSLSEVKFEDLKGKSFEVIRVVEMLCEVCEKPLSVKEKFLRKIQISSEKDYRDLLNRAAVHDRVEVDVENGKIYLYDHDFPGDVHPECIEKL
Ga0315280_103594812F006410N/AVKALSEKTRISPEKVKEMQERARERNLILREMKNQGSSTIDDLSKATGLEKSKLLKHMIAMRQFGKVLIVGERDNQLVYGLPEES

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