NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308408_1002853

Scaffold Ga0308408_1002853


Overview

Basic Information
Taxon OID3300031865 Open in IMG/M
Scaffold IDGa0308408_1002853 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7012
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F048124Metagenome / Metatranscriptome148Y
F069791Metagenome / Metatranscriptome123Y
F074922Metagenome / Metatranscriptome119N
F075805Metagenome / Metatranscriptome118Y
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308408_100285310F074922AGGAMVDSMLAQFLGVALDIQTPAYAGVRVTNGTLMASDGVVLVAYKLNTEYIRGEGMIPPATARALAALANEVYLDYVEVDGTAVNLVTREQYADRSERLTVAFPPFACRTVRIETFLPRCLPPHAELVCEAPSLKLVKAARLTDFVELVDKPVRGSELFQLKLPDAKIWYSVRQLREGLRLFRARDAVSVFRNEQGWLSFRDDWGRLFAVTPFVKRD
Ga0308408_100285311F069791AGGAGMPSLDITNFLNVAINIQATPFPGIHVADGVILATDGVMLVAKKFDDKVFLRGEGAISPKAARVLEALAEATWIGSIAVVGNRVTATARSTRYEENVGEVAGEYCEVKLPEFYCPRAPVARMLATLTDEGRGWVNLVENPKLKTVK
Ga0308408_10028535F048124AGGAMATISIWRGCRDWVAGSDYEVVTYEDAREVGSVRFEDAGSDIQYRIIQWDEGIVVFYVKREGHYCEAEIFEYPDLETAAEQYWFVLKKAGVI
Ga0308408_10028536F075805AGGAGGMRIQVWHGWRAVHNGKDVSRWEWVEFDGEPLGSLVVEIDEDRTDERVFYQMTDGRIVVAEHRYGKWEAGGVDYGVVSVYGSIEDAARRGWRDDLVRIGASYAPTRELDEWLSQYEEEE
Ga0308408_10028537F002982GAGGMKFQFERHPYSICAVLTDAGECDRIINVDRASDAPRVFALDIDPLAFKPLDALFALPRVVCVEIEQRSGGWRVEVAYWNKGLGTLAQYEAEAVTLSEALARCVWALAR
Ga0308408_10028538F087842AGAAGGMITIWGGYVAVGDARVYLITFDGEQIGGVEDGRNAQRTFYATADGRVVVHEVRIGRRRGGITYDQALVYVFSSITEACAHLAVNPQHIAQTRGDAALPPVEAPTLTPDEWARGVGTY
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