NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308408_1009849

Scaffold Ga0308408_1009849


Overview

Basic Information
Taxon OID3300031865 Open in IMG/M
Scaffold IDGa0308408_1009849 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3021
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F067304Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0308408_10098492F002970GGAGMSYSSVIDIIELLAGLAVQYNSAVVPVRRLATQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVAQLRFAWLARGDVQLLNVSGIVDVVRYGERAYEGVVMTTRFAHLIRAPSA
Ga0308408_10098493F005302AGGAGGMSHSGVIEGLFAGNFAVEISTNATTWTAVSNATVKIDDVELSRPSGEAFVGGSSDYATITVGKREPVELTLTFLYNEAANSAANTIFDRFQSATPTLGVRWSPRGLVDSARAYGTSNDGGTTFGLGVITSVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGTNPTNLNPAS
Ga0308408_10098494F004791AGGAGGMTIPAEIYDIDTIRVDRSALTIRDAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKTVYERVLPQIFEPDEAVRSRVAGLVPAVDEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDTVGDEGNE
Ga0308408_10098495F067304N/AMLRRNRLIPPFRAQRGEMLRHAPERLTVKRVGRAVVDVPTQHQFGVRRGQRREVEQT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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