NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308408_1043162

Scaffold Ga0308408_1043162


Overview

Basic Information
Taxon OID3300031865 Open in IMG/M
Scaffold IDGa0308408_1043162 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y

Sequences

Protein IDFamilyRBSSequence
Ga0308408_10431622F002229GGAGGMVTLLTLDGVEDVDYAPSDAEIRASLDDRALYGMVLHGVTWMRLVSGVGWWTVIGGRRVTATLAAVGWCWAADGPGERGYWSPALSSVIADVCAMYGGCIED
Ga0308408_10431623F002795AGGAGGMPVASGLVLRGMIAAYREFVSRKDGKVYRIVTVYGDLVAGEDVLCQIDGYDVFVDSPGYARGEMVAFPARLQFIRDGSGKPVIRLYVDEGVR
Ga0308408_10431624F002372AGGAGMPTRKEDALWSVVYQRSAHLRALLDGLDSIDIAVMYELDYYPYVVVELLRVREDAPPLVLRSLYVQANRQWEYHSEFALRVVDAALRLVEGYRADPSMGGAEAVWA
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