NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308405_1075364

Scaffold Ga0308405_1075364


Overview

Basic Information
Taxon OID3300031875 Open in IMG/M
Scaffold IDGa0308405_1075364 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MS13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069791Metagenome / Metatranscriptome123Y
F074922Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0308405_10753641F074922N/ALAALANEVYLDYVEVDGTAVNLVTREQYADRAERLTVSFPPFACRTLRIESFLPRCTPPDATLLCEAPSLKLVKAARLTDFVELVDKPVRGSELFQLKLPDAKIWYSVRQLREGLRLFRARDTVSVFRNDQGWLSFRDDWGRLFAVTPFVKRD
Ga0308405_10753642F069791AGGAGMPSLDITNFLNVAINIQATPFPGIHVADGVILATDGVMLVAKKYNDPVYLRGRGSLSPKAAKVLAALAEATWIGSIAVVGNRVTVTAQSTRYEENVGEVASGYCEVTLPEFYCPRAPVARMLGVLTDES
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