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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031877 Open in IMG/M |
| Scaffold ID | Ga0315314_1000019 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 288054 |
| Total Scaffold Genes | 314 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 254 (80.89%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Indonesia: South Sulawesi | |||||||
| Coordinates | Lat. (o) | -2.7726 | Long. (o) | 121.4938 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F052326 | Metagenome | 142 | Y |
| F071876 | Metagenome | 121 | Y |
| F082002 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315314_1000019159 | F052326 | GGAGG | LSSDVWQARIDLCVDKESRTYWIMLRLRNDFGDEKKHMSVLIPKAALSEALERASSLEEKGLHEKQEPTDLAETPDD |
| Ga0315314_1000019236 | F082002 | GGA | MQIEVLTREEIEKIIEEKLKKLVAEAEIWKKIAELESSTVKLRDDIARLSIKEPSLAESELVAAALIRDLAQRADLLEIRTALDSVTLKPKGYLVAQDFRAISEIVKKHGGSWSSERRMFAIRKRT |
| Ga0315314_100001930 | F071876 | N/A | MDPKQIVDTLFSVDKNIRYVGVVGPGPDYEIKASCMREGVKSLTREEKDREFIQVIPELILRMTEKLEDDLGRIRYSLLCFQKLTLMLFKTPEYVIVMSLEAGTFARPVFERIKPLLGLE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |