NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1000084

Scaffold Ga0308404_1000084


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000084 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29610
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (92.50%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Associated Families19

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F012577Metagenome / Metatranscriptome279Y
F016100Metagenome / Metatranscriptome249Y
F016404Metagenome / Metatranscriptome247N
F025895Metagenome / Metatranscriptome199Y
F037517Metagenome / Metatranscriptome167Y
F043176Metagenome / Metatranscriptome156Y
F044842Metagenome / Metatranscriptome153Y
F051735Metagenome / Metatranscriptome143N
F072382Metagenome / Metatranscriptome121N
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10000841F002970GGAGMSYSAVTDIIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWYVRGDVQLLNVSGIVDVIKYGERAYEGVAMTTRFAHLIRAPSS
Ga0308404_100008412F051735AGGAGMYQDVTIINGPVTKDGVADYERLRIKARPLGRPYTWDNGRAWNPHTTNGGFILVFECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYERYNSLDEARASGRGWIEYALRNE
Ga0308404_100008413F006418AGGAGMPKRRSAPAPRPVREIVIDSGDDFKIIFDRETRDYAVEYRGEPVGWRAYVEDARRLVEQLRREDARRGE
Ga0308404_100008414F043176AGGAGGMQTYRVWEGTRTWLPGDTSEYTETEILADELGWFEDVNPDGYSGTAYYVYRTESGEIIINVVNKNYGIGEPSRAVIYRFSSLEEAARSEQRYALSELRLI
Ga0308404_100008416F007976AGGAMPSTELSNFLRVAIDIQATPYPGVHVDDGVIMATDGVMLVAKKFDDKVFLRGEGAISPKAAKVLEALAEATWIGSVAVVGNRVTVTAQTTRYDEQLGAEAAGAYREVTLEFYCPQTPVKRMLAVLTDESRGWQQIVENPRLKTVKEASAKDYVALVNDPRNGGELFRPKADNDTHWYSVAQLRRGLRLFGKNSRLSVRRNAKGWLAFGDQWGYTFAVTPFVKHNETQR
Ga0308404_100008417F002982AGGAGVKLQFERHPHAICVVLTDAGECDRIISVARASDAIDVFALDVSPAAYKPLDALFALSRVVCVEIEQREGGWRVEAAYWNKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308404_100008422F044842AGGAGMEEIELWRGVRGNTFQSTHLVRFIGEYLGMVTVAHADEWVERCVLYRTEDGCVAVHQLRLSLLDDGVDVAEAYILPALDAGEGERGE
Ga0308404_100008424F025895AGGGGGMNDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAADWTSGVRGFPAGVAAICFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDLVTDYTEAVALVDIWQRSGLFAPLPDVIEGAAAVLVKVGWTFAASFAFEFLAVLFGATTLLLAANVRAASGGGGGR
Ga0308404_100008426F005028GGAMRDDDLRAAMSFFAERLRGVDGDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDATDAHLGLCWRLDEDVLTVLSDLHAAAKRLRQPYRDLAAVCLKWGYVHETAVQMLAKVLERKPQNVVED
Ga0308404_100008427F008499GGAMKKSRSDPRWKRKEREAVKALQATFGRVSDPSLSRLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308404_100008428F004307AGGAMFKELINHNGNGRERPELNGAYTAIFRGVSQRQRPTFETRNAPEPVMEDVFVFEFEVEDDDGNPLRVSKWVRKPTRLTHPSKNGKVTNLYRVLAALYGVAQMTDAQLERAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRKARNRKKEEDEEVPF
Ga0308404_10000843F105262AGGAGGMLVQETIQPLLRYFNAAASGTDTSVISIANAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKTIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPARDVPATLPTDWTRVL
Ga0308404_100008431F006252AGGVRSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAPLDFLIVDDERPIAALEVKRRSVRSDAYRTTILPQSVVDAARRLTIPTYAAILFTDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDISERLVKVEEVHQRQRRSA
Ga0308404_100008433F016100AGGAGGMVTSVKVERFKEYSELVRVVSRSEKTPAMNKDIIRPLNYELLIGSHLPEPDWHRLGALVVALFRSFAVVDVEIWQADNGVWVADALVDFGDRRRLRKGEGDAPLHAVIELITDIQRY
Ga0308404_100008434F072382AGGAGGMKTVYHTKDVWFPPFSIKIEPERGTWFADVYVRYAENPSLDTKYNAYIGADNFLAETPIPAVDRRDVAKAIESLVFDGLVGLVIYPTKEGWGASINLCQELENRYLHGTGATPADAIRNSNYPPPLRNV
Ga0308404_100008438F012577AGGAGMLVAIARPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPDYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQRDARLSVVQNMDNMTRWKPVGAGFMTGSGYDSRGDLWEYEVVEAIGFPHVRIRTKKAFTITNATLFFVAYLFEQPERYVTVRTNESIIVLPAIMTGLADGVWVAPVTAIPQPNVYTLTLGAFTGLSSTGTVTATTCYGWVIGVRASGAETVAGATSVTFRAVINLSEIFGISGGLLSINLSGCCAVFLPPQTNVKIEKPDANLRELVEHSSDDFVQVRYHRKRFFRDCPEPIIDFRTDSPLTWRFPETTRVVDISKAPNRVYGQYRGYWTDHLTAMTTIQSLESRRQLARRVASVGEYGSKALAEARRDEAAIALDRQIAPITVELDNSRYELMTRTGETVPNWAADVSDYVIVPGYYRNAKITARTITRERTTYTVSFNPDDFVTAL
Ga0308404_100008439F037517GGAGGMRIRQIGTLVFDANTNIVVDANNQDAPGIGFRINSLYDPQPFAVEIAFRRNTRQQALDAVNALARELYSSAQRRQDGRFAVAGGALVVAEDANGGTTLRSYLRDGSVTLLSVEATSTGVLARVRVTGTLINPFLNYAFAQTDVTSLKPYERRVITLSGTSDAYLYKSSLFYSVSNMNGLYNALFAVEELESATGASRIQAISPATVSSGITMQNQSWSAGWQTLTRAFFASATSGTITYTINPAAFPQDVYRLFIEIFCPTTPPINAQYIVSWDGQPQIAETITGDRSWYAPALFVRGNATFPLTLDIQSVPTGTLVMPLILIPTDGVSVWSVITPPTLQTWHTLDQQSAFSRPFETTPTGTVYGAPGLISSRYIAVFNGVMAPTITTASATLIIRARQIEPAAFA
Ga0308404_10000846F005631GGAGMQVSVSVDLDNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAVLKGR
Ga0308404_10000849F016404N/AMTIDELLTEEARAAVLRALFMIVVNDNEPSSARVAAARLFLSQFDETPNADQSVLVIIDEAAFVKTV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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