NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1000115

Scaffold Ga0308404_1000115


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000115 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26340
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (77.50%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F020833Metagenome / Metatranscriptome221Y
F032563Metagenome / Metatranscriptome179Y
F039500Metagenome / Metatranscriptome163N
F042064Metagenome159Y
F044245Metagenome / Metatranscriptome154N
F044342Metagenome / Metatranscriptome154N
F044841Metagenome / Metatranscriptome153N
F046061Metagenome152N
F046762Metagenome / Metatranscriptome150N
F049463Metagenome / Metatranscriptome146N
F057955Metagenome / Metatranscriptome135N
F068330Metagenome / Metatranscriptome124N
F070747Metagenome / Metatranscriptome122Y
F076974Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_100011512F032563GAGMTDKQMAKLAAAYKKWAEIIVKAWEQDIQGCTLTSFIFQVEMRYPGCILATREVKRQLEQMKIPIYAVYVGAQSRVILIEIMEGKKKAEKINRELKKKIHVSGWLVVEREHREDGTEEQLSQVESA
Ga0308404_100011513F070747GAGMEQKNSFHKLNQLSARITLLDQKRREALEELVNQFCDLYGIAKSRRIDVMETEEKYRGAICAVLFALDELSKRKIAVKRVYWDKYGGLLISLCDPKLNEVKIDEEIKKLAKQRKKQDCGWFIV
Ga0308404_100011519F039500AGGAGMKEIVEGVKKADIERIDETVRDLAELAVAIQRTERMERNAVTLRLLLIARAIEVHKYDVTFKLLTETLSYTDFYAVQLIKLAQEVGEQALMNAVTSGKPLTLAQWQALAEVGQESRNEVIDHAIEDDLPPVEITARATGLDTEEVIIAKLLKRLNSLLVQIEKMNARQRAIDVLAEHGYVTKIIRNR
Ga0308404_10001152F042064AGCAGMTLAVILLSLSDVRLAKQDEHRSRRSAMQHRFASLSHCLLGFPTTILLKLMYILRAPLHNLLGLDKRQERGIIRSMNSIVRNYLAHALEDTNRLAKRLNRGSMPPVVAMWQEGHRLVIASCDSYQQHEFRLFIFRDDPGFPPLLHERVLAFSPAAIAAAARAFYEQLGENDLLHVDYDDEQTTVALTAPGITISLKATESLHRDHIRRFAATFTDTERPDVIKVNAKELLAALPKPRRNNERIYMFVHFHECTWQVGVQSKLNSWQPTEHNGVFDAQDVQGTPGCKLNVQMLREALEVAERYHPFAECTIALTKRNEAVLVQASVGKVLDFRAYIMPVVNLQP
Ga0308404_100011523F044245AGGAGMIDTMLSIPFRYPLLKKMNRTDAMVMSAILFAFRLHQQTGKYFYLSDAKIMEWTGFKRTAVYEARKRLEAEGWVVVKRGHGGHNMYMITDAVIVRLEETDGQSREQQQERLRKAAEKAVSELNVEQAIARILLTFILRTGRMPTKKALRRWIVAARKIRDHGHSAETIADLIRKEDRSLFALLKRIEQGAVKKQKRIEYEVTYDPQVGWLAIPHEVEVVEQALEAINERL
Ga0308404_100011527F044342AGGAGMNDPVIPVTMHLPKSVVERFKRKAVELIPEEKEEAPSLLLTLFINYMSSEDYWCLFVPDLTREDYKKWQEMANQVYDSIYEVVKYHGAGMFPGEIADLAQAVIAARRMTPDDLIKLIIISARYNQVMWKRNDSNKDSPAPSQ
Ga0308404_100011528F049463GGAGMRKDFGNEYQKQSKTLTHQRTQELLADMLRVPVYIWGNKTPSLDDLNAFLAQFGCQTNLSLLRPVKVWANLEEDIINEADKVIAQFIQSDLESPVIVVILPPLVALAAALVVRMKEKCPTLKVLVVHYRVEHEPHFLGFELFCG
Ga0308404_10001153F020833N/AMIDELIEYLRTHQLLDKSPREALLLVANHALAREIIVTPDALKQALCTALPERGEQLFDLLGVRIPYSLSALCYLALYDQWLCYAMSLTLETLLTNHKSVV
Ga0308404_100011530F068330AGGAGMNDKLMKKLSQLAQPEVLIKLGIGLFLFALWTALYELGMRYNQGAGLSMIVATGMVVVLVAHGIMACQPSPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSTYIVSMASRSPVNGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATIMADISFIAIKSNIQHQIERRQKNNRYDYFDLIVWAVFGIVVSVYLILINSFVVRYTAGINDSGALLSLVVSLYGMSPTVLLGGLAALTVLTKVVDRETTPKSGARLDEQFATNGVANRQNVKM
Ga0308404_100011531F076974AGGMDHVKRRRGRPRKPAALEIDEFFAVLELLVENAKRHHMLESVLVIDGKLKVAFCVPLFGVTERLLSLKRDRLAESQSPEQLRMPL
Ga0308404_100011533F057955GGAMIDLIEFFTTYGVLGVVALISMSLSLWLLRENQKTLDQCNARVDRLIETHIGFVKNVTEKMDELLRDIGRLIDKAEKTIEELEKAKSLRKDV
Ga0308404_100011534F008994GAGGMRVTRFAIDENGRALFPDYFIVDDNTRFALAMYSANINVQTIVDEGLAQTPWLSTQWPGRTVSFNEWRDAFARNGHSFPQYHVQIGERVRLSELVDINRAFIELFMNGVDLTDPLNAQTHRELLTERNVDLDDFLK
Ga0308404_10001154F046762N/AMTRSRFDFRIKFDANREVFVLTVAPEVTSLDGRGVAPKAYEAHAICMSPNLFVVRIPDNEIPSDFVAVGDNNLPRGVQLIELRFVGSKVCFTFQISDEALLSVTPTVYRAWMQSLIQAGVSLDAFARE
Ga0308404_10001156F046061N/AMSETILESIRAMFPPDTPLEFSMDIGDIGIEGICPLCVATYSDGTIIICAFWNADRRKMWAWFDGERWQTSEERPSIVDRIKPRQR
Ga0308404_10001158F044841AGTAGMKAKELIKELMKIPQLNRFIKNSDRDVIASMSAICNVMLLKKGEKYISTIMANWVTLGMNHRIDRKTIKKNARDEHTDFMLHYQMFASVNQLFVYKVRRSIARIYRAKMIDVDPVQSLMRSTELNTLYLLLLLAGKMYFMSRAQ
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