NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1000330

Scaffold Ga0308404_1000330


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000330 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14796
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N
F056952Metagenome137N
F070715Metagenome / Metatranscriptome122N
F089597Metagenome109N
F097406Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_100033014F013092GAGMNAVLNDFFETLLRSRGVRLRLPNGSEIDAVVARRDSQSVLLGGQVAADTTTQCFVVRASDLPAGYWPRVADEIVNVATSQRYIVVRAIGGAHATTSSDPYGFLVRVWTRLAS
Ga0308404_100033016F022362GGAMIASLLDAVVDTLNGPPLAASVVASKTWAHYWVLARETPDVCVVTFIRSERERLSRSRFRFLLDVEVVRARPYVDASSVETVVNDVHSIASRLTSQEVLERGGIAYAFESISFSDPLYEIEEVFDESSFVRASVTARYAVLESL
Ga0308404_100033019F070715GAGGMRHRFTDEHGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDTTNDNALSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRDSLSRHGVTANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEASTAISSLTSGTSPVTSA
Ga0308404_100033020F097406N/AMYESRLFHDHCHYGIIAAAIANAFRGSESPTIRVEDIFPDVVEYLERFGVRNDNELPLLTKDDLKSWLAQQKSERVVRVSS
Ga0308404_10003307F089597AGGAGGMPRRLSWDEVSACIDRESVERYGRYLRGVVEGETYVPKATTTPSLVNRTIVLGVVYDWCRRRYRHRPFAVVIRAFSWCARFCYPFHPVFARFGIESEDVIEALEWIATDSYSFRFAPASYGVTIVSEHRDGDRRARHYFAPVPLVAPRIDDPTAVPFRLRMATRLVMEAALRAICVVDDDGNYDEIAIRATVRDLLEVAAPLVTPN
Ga0308404_10003308F056952GAGGMKRPPSYRLLDVFGNVVYSANDLRKVVKRLAQSLVKPTIYSAQGRRHVVFYLENGVVKCYVGNFGESRKSVEERVIRLFRASDIARRVRRHV
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