NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1000541

Scaffold Ga0308404_1000541


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000541 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11528
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054491Metagenome / Metatranscriptome139N
F070747Metagenome / Metatranscriptome122Y
F104638Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_100054111F054491GGAGMSELKPGVTYKWVAERSEWCTGCGCNNYATGQCIRVDNSRIVLGLKERIEVVGGTSHRFSTAMLSYCKSEQAAQEAIQKGLARPVTQADFRRPLMLAY
Ga0308404_100054113F070747GAGMTKQEDNVSEIDSLRAQTTLLNARVTLFDQKRKEALEKLVNQFCDFYCIPKSRRFDVMRTEEEYRGAICAVLFAVNELNKREIAVKRVYWDRYGGLLIKLADPKLNEVKIDEEIKQLAKKRRKQNQGWFIV
Ga0308404_10005416F104638N/AMNDKKDMILAALLTLDQLAVQFAVLDEIYPDFRALSKALISYRDDLMRRADVSENDFEAYKRMVLNEIGDAVE
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