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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031878 Open in IMG/M |
| Scaffold ID | Ga0308404_1000793 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9547 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F001381 | Metagenome / Metatranscriptome | 709 | Y |
| F002372 | Metagenome / Metatranscriptome | 566 | Y |
| F002795 | Metagenome / Metatranscriptome | 529 | Y |
| F066811 | Metagenome / Metatranscriptome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308404_100079314 | F066811 | AGGAGG | MEFNNQPQFNAPNMTDILNAATSIFNPFVSVLALAIGVTLGARMLGRIVNLF |
| Ga0308404_10007932 | F000855 | GAGG | MDWLEDFWSKIVSWFDELSAGVHNGVVGWVNSLVEIWNGWMDALLHPAQAMPSIPALRWIVDWLDDIADYTRLMYMLADYVAYASIVQQALLAQLAIVTVGLAFRAWLVIRRVVLVS |
| Ga0308404_10007933 | F001381 | GAG | MQYVIATLYVLLWLALAAAAALWLPRWALPAVLVQLAVAYVMLRAFWLTVARDD |
| Ga0308404_10007934 | F000642 | GAGG | VQEISVALAICAVAAAVWYMRRRDAGAGRVRGWLLLYDAVGGWRVLPAAYGDAGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHCALERARESAALASLWRGGGQWIDLLRVMGVVLPAVFAYFTWAQVASLQSLAAQILALVGK |
| Ga0308404_10007938 | F002795 | GGAGG | MATNSGLVLRGMVAAYREFVSRKDGKTYRVATVFGDLMAGETVLCQVDGYDVFVDSSYARGEMVELPARMQFLRDGSGRPVIKLYVDQGVR |
| Ga0308404_10007939 | F002372 | AGGGGG | MPTRREDALWQIVHRKSSHLRALLDSLDLVDIGVTYELDFYPYAIVELLRVREHAPPLVLRSAYVQANRQWEYHSEFALRVVEAALQLVEEYRADPSMGGAEGV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |