NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1000889

Scaffold Ga0308404_1000889


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000889 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9022
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033055Metagenome / Metatranscriptome178Y
F050402Metagenome / Metatranscriptome145Y
F053098Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10008893F053098N/AMVEQIGIRLNGTAYLYRMGDGDVLRLWVSQQSLLPLTPTNHTVLMVGRMDSEPYTVNDYTRVPILCDCSIYTGRPIAKLTYKPTNYTIPLYPSREWLDYLHAHIPIIIHHNERFWVFTDYDSDTVQLYRERGGRWDNTYRCWVFRELPSATQLQNAPICPLFSLLSPV
Ga0308404_10008896F050402GAGMGWHIYAYATDQPHPLDMIAITPDGRLVGVEVKCKCARIYYPDTGIDRNDYYAYHNLQSQLNLPVLLLFVDNYSRTVYGNYLDNLSQPRAIVDNKRTLEYPMITEQYVYFPLQAMEHYVNIPPAIVAQLNTRTHSKYHHPLPHATDIDDGGV
Ga0308404_10008898F033055GGAMVYPNRVIVNDNWATNTGIDILLALGENDGLYIYNTSPVNLLHLGMPSEVVNCEVRVRSDGMNPPLILNFYRAGTLIDSVGVPTTNNWVVHTLTVDRWDSVELLVGIGGTVGVDFLRAEPYGGSPTKRTLTGVGI
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