NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1001049

Scaffold Ga0308404_1001049


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1001049 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8289
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F059995Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10010491F059995N/AILWDYARYRSSVDAALVYEYAAALHGAHHLTVSPRLRERYDFTDPAAGWAQIADEDVLALLNSGEWLSILNAGEERNLLDDLSRSW
Ga0308404_100104911F002229GGAGGMVTLLTLDGVEDVDYTPSDAEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVIGGRRVTATLAAIGWCWVADGLGVRGYWSPALACIPGEVRALCGDGCADDEDEEGGDGDG
Ga0308404_100104912F002795AGGAGGMAMDSGLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGEVVLCTVDGYDVFVDTPGYTRGEMVELPARLQFVRDGSGRPVIRLYVDEGVR
Ga0308404_100104913F002372AGGGGGMPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVQANRQWERHSEFAMRVVEAALQLVHEYRADPSVGGSDSWA
Ga0308404_10010495F000855AGGAGMDWLEDFWSKIVSWFDELSAGVHNGVIGWVNSLVEIWNGWMDALLHPAQAMPSSPQLRWIVDWLGGMADYTRLMYMLVDYVAYAGIVQQALIAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0308404_10010497F000642GAGGVQEISIALAICAVGAAIWYMRRREVSGRVHGWLVLYDDLGGWRALPATYADSGIVADGVTYPASLPVVRVDRTLIWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVMGVVLPAVFAYFTWAQVASLQALVAQILALVGK
Ga0308404_10010499F004024AGGAGGMHSERDYLRQPSSLSDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYARVASVVEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRDGR
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