NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1001168

Scaffold Ga0308404_1001168


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1001168 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7859
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002372Metagenome / Metatranscriptome566Y
F002978Metagenome / Metatranscriptome516Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_100116813F008135AGGAGGMRAVIDPRTERVLAEAGAGIARVLDDRQRRAVALAIEACWYIVAALPPDGSVTFGDVVRLLRWFARGFNEDVEADDAGD
Ga0308404_100116815F002372AGGGGGMPTRREDVLWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLSVAEGV
Ga0308404_100116816F015735GAGGMVVYHHWSVEWHPRDNPPHGLPRVVCIARRAVSDPWCGPGPFPADVDRAARFWNLVASGGARDHGAGYEVVWRLSVVVDDADGDAPPDGAWSDDLVYRARRRLLRWIMRSQCPIPALADHFADEHFRDHPAYFGLLEPGA
Ga0308404_10011684F066811AGGAGGMQFNNPPAFTAPSMNDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0308404_10011686F000855AGGAGMDWLEDFFSKVVSWFDERAASIYNAVVAFINVLVDIWNGWMDTLLRPAQAMPSIPALRWVVDWLGGVADYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0308404_10011687F001381GAGMHYFVATLYVLCWLALAAGAALWLPLWALPAALVQLAVAYVMVRAVWLTVARDD
Ga0308404_10011688F000642GAGMQTISIALAVCACAAAIWYMRRRDAGAGRVRGWLLLHDDLGGWRVLSAVYGDAGIVADGVTYPASLPALRAGRELVWIARCESAALIEHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVSSLQALVAQILVLVGDK
Ga0308404_10011689F002978AGGMRDWRVAIVPWADRRLWFLQARRGRRVVWGVVYDASDPDSVALARRAIATLRAAGADCSALPHPLPGTTPPPGA
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