NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1001203

Scaffold Ga0308404_1001203


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1001203 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7724
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026459Metagenome / Metatranscriptome197Y
F029920Metagenome187Y
F031690Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10012033F031690GGAGMNHNHYPQNLLYCASFDAVVGTEHCRLYLLASNAEQAAKYTWPTKTRKKTRYVVSCERLAGLQYADEIEAAAHRYGFQHNHPHICDVMEDHKSLASVIVETNALRWALSFLPDDGTKTVNIDDKGLSIQGVPLGGITLYSAEMLVRSRPLRLAFEQMPHDETAQVDILGRRHARALKISLGTEFHYVFDYRNGFAAFIGGER
Ga0308404_10012034F029920GAGMISSNALERAFQTERPLKGFIAPGLAFSYQPREYLAIGRADRQPDADDIALVITLTREAFIIIACEPQREVVELNGITWHLARWPLQRELVADHLPQIKMERRDR
Ga0308404_10012039F026459AGGAGMNSQKVEMLRTINAIESTIRPSVNSISMLIAALTAMGSGEIIQRALYRVERQGPLDLIKDAEELIDILYEVGEGVIAMKLQHRLAELREGESADAIAGLWELVDLLPHDAYMAFGFAVESAQIRCGEHPNPQELLRDIDFDREGFRFGPAWEFWGERSPEAIRVAREAFIAHLLHAAGLGDEPEYPEPLSD
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