NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1001255

Scaffold Ga0308404_1001255


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1001255 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7570
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F012577Metagenome / Metatranscriptome279Y
F037517Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10012553F002970GGAGMSYSSVTDIIELLAGLAVQYNSAVVPVLRLSTQPNWSDAAQLPVRIIPTIGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVARLRFAWLTRGDVQLLNVSGIVDVIRYGERAYEGVAMTTRFAHLIRAPSS
Ga0308404_10012554F005302AGGAGGMSHSGVIAGLYAGNYAVEISTDATTWTAVSNATVKVDDVELSRPSGEAYVGGSSDYATVTVGKREPIEITLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVSQARAYATSNDGGTTTGLGVITNVTLSTLDPGDAEPYVAMVTVRTPSLRQYTLGNNPTNLS
Ga0308404_10012555F004791AGGAGGMSTPANIYDVDAIYVDRNALLIRDAATLLNRELTPETIARLVRRAIGNQADLFPIRALRRVYERVLPQIFEPDAAIRARVEGMRPNVATITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDIINEPYAAAALLLKKIFDSVAEEGNE
Ga0308404_10012558F037517GGAGGMRIRQIGTLVFDSDTNIVVDANNQDAPGIGFRADSLFDPQPFSVEIAFRRETRQQALDAVNALARELYSYAQRRQDGRLAVAGGVLVVAEDASGGASLRSFLRDGSVTLLSVEATSTGVLARVRVTGTLVNPFLDYTFTQNILTSLLPYERRVVALSGLSDAYLYKHDLLYFASNVAGLYNALVAVEELESATGASRIQAISPATVSSGITMQNQSWSAGWQTLTRAFFASATSGTITYTITTAFPHDVYRLFIEIFCPSTPSSNARYLVSWDGQPQIAETISGDRSWYTPALFVRSNVSMSLTLEIQNVPTGTLVMPIVLIPVDGVSVWSAITTPPFFAFGVLSHQSATARPFTTTPPGTVYGAPGFASSRFISVFNGMMVPTITGAFADLVVLSRRIEPAAFA
Ga0308404_10012559F012577AGGAGMLVAITKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEDARDGSITWHALGFGALQRDARISVVQNMTDMTRWQPVGSGFMTGSGYDSRGDLWEYEVVATGGFPHIMIRTKTAFTISNTTLFFLAYLYDQPERYATITTDERLTVFSVFISGLADGVWVAPVTATPQPNAYTLTLGAFTSIGASGTVTATNCFGWVIGVRASGVETVPGATAVMFLAGVNDLSSGGINAQALSTALIGRGGCCDVLLPSSADVSTAKPDANLRDIIEQSIVTFVRYHRKRFLRDRPRPTIDFRTDSPLVWRFPETTRVTDISKAPNRVYAQYRGYWTDHLTATISITSLESRRQLAPRVASVGEYGSKATAETRRNEAAIALDRQIAPLTVELDNTRYELMLRSGETVPNWSADVSDYAIVPGYYRNAKITSRVITRERTTYTVSFNPDD
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