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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031878 Open in IMG/M |
| Scaffold ID | Ga0308404_1001921 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5913 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002982 | Metagenome / Metatranscriptome | 515 | Y |
| F006418 | Metagenome / Metatranscriptome | 373 | Y |
| F007976 | Metagenome / Metatranscriptome | 341 | Y |
| F010840 | Metagenome / Metatranscriptome | 298 | Y |
| F016404 | Metagenome / Metatranscriptome | 247 | N |
| F043176 | Metagenome / Metatranscriptome | 156 | Y |
| F051735 | Metagenome / Metatranscriptome | 143 | N |
| F075805 | Metagenome / Metatranscriptome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308404_100192110 | F002982 | AGGAGG | MKIAFERTPTAICAVLTDAGECDRIINVARASDAFDALALDVHTAAHKPLDALFSLPRVVLVEIARREGGWRVEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR |
| Ga0308404_100192111 | F075805 | AGGAGG | MRVNVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEIDEDRTDERVFYQTTDGRLVVAEHRYGDWGKGGVDYGVVSVYGSIEDAARRGWRDDLVRIGAYDAPTLELDEWLSRYEEEE |
| Ga0308404_10019212 | F016404 | N/A | MTVDELLTDEARAAVLRALLMIVLNESDPASARVAAARLFLSQFDQQPNAERDVLVIVDEAAFVKTV |
| Ga0308404_10019213 | F010840 | AGGAGG | VNLPFSQPLDKVTFGALAAATVIILTWALREFAGIDLPAEVQSALALIIGYVVSYHIPLSETEAEAIARKYYKYK |
| Ga0308404_10019214 | F051735 | GGAGG | MFRDVTIINGPVPKDGVADYERLRIKARPLGRPYAWDNGRAWNPHTTNGGFILVFECEDGAVYVQEIEWEVDPYPDATPDPRTYYYYEKYASLAEARAGGRGWLIEYALGNE |
| Ga0308404_10019215 | F006418 | AGAAGG | MSKRRSAPKPQPAREIIIEEGSDYRILYDRETRDFAVEYRGQPVGWRPNEAEARRLVETLRYDDARRGE |
| Ga0308404_10019216 | F043176 | AGGAGG | MQTYRIWEGERTFLPGDDTSKYKVFEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQNYGIGEPSRAVIYRFSSIEEAAQSEQRYALEELRLI |
| Ga0308404_10019218 | F007976 | AGGA | MPSNELAHFLNVALDIQVTPYPGIHVADGVMAATDGVMLVVADWGLEFLRGEGAISPRTAAVLAAMAEVAYVGGIEVDGNRVTALVQITRYDEKAGGEVAGEYCEVKLPEFYCPRVPIARMLAVLTDENRGWQQIVENPRIKNVKEWSGKEFVALMSNPREGYELFRLKDTDDAQWYSVAQLRRGLRLFGAKARLSVRRSNNGWLAFEDGYGRTFAVTPFVKHD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |