NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1002220

Scaffold Ga0308404_1002220


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1002220 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5463
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F031016Metagenome / Metatranscriptome183Y
F043176Metagenome / Metatranscriptome156Y
F074922Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10022202F006418AGGAGMPKKRRSALKPQPAREVVIEEGADYRLLYDRETQDYAVEYRGEPVGWRPTEAEARRLVETLRYEEAKRE
Ga0308404_10022203F043176AGGAGGMLQTYKIWEGERTFLPGDDTSKYKVFEITGEELGWFEDVIDGKTYYVYQTIEGEVVINIVEQNYGIGEPSRAVIYRFSNLEDAAQSEQRYALEELRLI
Ga0308404_10022204F007976AGGAMPSSELAHFLNVAIDIQAPPYPGIHVDFGLMVASNGVMLVTKRFDDKVFLRGKGAISPKAAKVLAALAEASNIGGIEVNGNRVTVTAQSTWYDEKAGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRNIDDTHWYSVAQLRCGLRLFGKNSRLSVRRNSSGWLTFSDQWGYTFAVTPFVKHN
Ga0308404_10022205F074922AGGAMVDSMLAQFLNVALDIQQTPAYAGIRVTGGTLAASDGVILIAFKLNSEYIRGEGMIPPATARALAALANDVYLDYVEVDGTAVNLVTREQYADRSERLVVTFPSFACRTVRIETFLPRCLPPHAELVCEAPSLKLVKAARITDFVELVDKPVRGSELFQLKLPDAKTWYSVRQLREGLRLFRARDSVSVYKNDQGWLSFRDDWGRLFAVTPFVKHD
Ga0308404_10022206F002982GGAGGVKIQFERHPHAICVVLTDAGECDRIITVARPSDAIDALALDIHTAALKPLDALFALPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYEEDAATLSEALARCVWALAG
Ga0308404_10022207F031016AGGAGGMTITIWKGSRRVVLGDDIDFIEYETFDGEELGATWEEENSRGTHTIFYRTEDGKIVVHQVLWSRWEGEATHAYIHVFPSMGGVNGAAAMFWRELRKAGLIPPLTVGLDE
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